GI NOTES
Clostridioides difficile Infection
Key points
- Test only patients with 3 or more unformed stools in 24 hours who are not taking laxatives. Do not test formed stool or test for cure.
- Use a two-step approach (for example GDH plus toxin, or PCR plus toxin) to separate infection from colonization.
- First episode: fidaxomicin 200 mg twice daily or oral vancomycin 125 mg four times daily, each for 10 days. Metronidazole is only for non-severe cases when neither is available.
- Fulminant disease (shock, ileus, megacolon): high-dose vancomycin by mouth and rectum, IV metronidazole, and an early surgical consult.
- Recurrence is common. After two or more recurrences, use fecal microbiota transplant or an FDA-approved microbiome product.
1. Risk factors and diagnosis
- Risk factors: recent antibiotics (especially clindamycin, fluoroquinolones, cephalosporins, broad-spectrum penicillins), age over 65, hospitalization or long-term care, IBD, immunosuppression, possibly acid suppression.
- Testing: 3 or more unformed stools in 24 hours, no laxatives in the past 48 hours. A positive PCR alone may reflect colonization; a positive toxin supports true infection.
- Do not test asymptomatic patients or repeat testing within 7 days, and do not test for cure.
2. Severity and treatment
| Severity | Definition | Treatment |
|---|---|---|
| Non-severe | WBC 15,000/mm3 or less and creatinine below 1.5 mg/dL | Fidaxomicin 200 mg twice daily for 10 days (preferred) or vancomycin 125 mg orally four times daily for 10 days |
| Severe | WBC above 15,000/mm3 or creatinine 1.5 mg/dL or higher | Same drugs and doses as non-severe |
| Fulminant | Hypotension or shock, ileus, or megacolon | Vancomycin 500 mg four times daily by mouth or NG tube, plus rectal vancomycin if ileus, plus IV metronidazole 500 mg every 8 hours; urgent surgical consult |
- Stop the inciting antibiotic if possible; if antibiotics must continue, keep treating C. difficile until they are finished.
- Avoid antiperistaltic drugs in active infection.
- Surgery in fulminant disease: rising lactate, WBC above about 25,000, worsening shock or organ failure, perforation or toxic megacolon. Options are subtotal colectomy or diverting loop ileostomy with colonic lavage.
3. Recurrence
FIGURE: MANAGING C. DIFFICILE OVER TIME
First episode: fidaxomicin or vancomycin, 10 days
First recurrence: fidaxomicin (standard or extended-pulsed) or vancomycin taper and pulse
Second or later recurrence: antibiotic course, then fecal microbiota transplant or an approved microbiome product
Original diagram based on the ACG 2021 and IDSA/SHEA 2021 guidelines.
- Recurrence occurs in about 1 in 5 patients after a first episode and more after each recurrence.
- Microbiome therapies (given after finishing antibiotics): conventional fecal microbiota transplant (usually by colonoscopy), fecal microbiota live-jslm (rectal), and fecal microbiota spores live-brpk (oral capsules).
- Bezlotoxumab, previously used to prevent recurrence, has been discontinued in the US.
- Fecal transplant can be considered for fulminant disease not responding to antibiotics when surgery is not an option.
4. Prevention
- Antibiotic stewardship is the most effective measure.
- Contact precautions with gloves and gowns; wash hands with soap and water, because alcohol gels do not kill spores. Clean rooms with sporicidal agents.
- Review the need for acid suppression.
- Probiotics are not recommended for primary prevention by IDSA; evidence is limited.
5. High-yield pearls
- Oral vancomycin is not absorbed, so IV vancomycin does not treat C. difficile.
- Ileus can cause severe disease with little or no diarrhea; think of it in a sick patient with a distended abdomen.
- Always test for C. difficile in an IBD flare.
- Leukocytosis without another cause in a hospitalized patient on antibiotics should raise suspicion.
Self-check questions
- A patient on daily lactulose has 4 loose stools. Should you send C. difficile testing?
- WBC 18,000 and creatinine 1.7 mg/dL with positive toxin. Severity and treatment?
- Hypotension and ileus with C. difficile. Treatment?
- Third episode of C. difficile. What prevents further recurrence best?
Answers: (1) Usually not; laxatives explain the diarrhea, so stop them and reassess. (2) Severe; fidaxomicin or oral vancomycin for 10 days. (3) Fulminant: oral and rectal vancomycin, IV metronidazole, ICU care, and surgical consultation. (4) Fecal microbiota transplant or an approved microbiome product after antibiotics.
References
- Kelly CR, Fischer M, Allegretti JR, et al. ACG Clinical Guidelines: Prevention, Diagnosis, and Treatment of Clostridioides difficile Infections. Am J Gastroenterol. 2021;116(6):1124-1147.
- Johnson S, Lavergne V, Skinner AM, et al. Clinical Practice Guideline by the IDSA and SHEA: 2021 Focused Update Guidelines on Management of Clostridioides difficile Infection in Adults. Clin Infect Dis. 2021;73(5):e1029-e1044.
- McDonald LC, Gerding DN, Johnson S, et al. Clinical Practice Guidelines for Clostridium difficile Infection in Adults and Children: 2017 Update by IDSA and SHEA. Clin Infect Dis. 2018;66(7):e1-e48.
For educational purposes only. This note does not replace clinical judgment or local protocols. Check doses against current labeling and institutional guidance.

